species:   Clros
pid:       PID1835
parent:    cro-mir-1
paralog:   
locus:     CADEHS020000002.2:2259339-2259416
matures:   ['UAGAAUUCGGGGUAGAAU', '']
srr:       ERR5960111
genome:    /Users/jax/+Genomes/Fungal_genomes/Clros.GCA_902827195.2_C_rosea_IK726_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Piombo2021-ru.ERR5960111.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Piombo2021-ru.ERR5960111.cram CADEHS020000002.2:2259339-2259416

12628 out of bounds
1059 alignments
927 proper strand
922 stranded perfect matches

****************                                          ********************
UACCCCGAAUUCUAUGGCGGCAAUGUGAAUGUUAGGAUCGCGGCAGGUUAGUUGCCGCCAUAGAAUUCGGGGUAGAAU
((((((((((((((((((((((((.....((((........)))).....))))))))))))))))))))))))....
------------------------------------------------------------UAGAAUUCGGGGUAGAAU l=18 a=834 c
------------------------------------------------------------------------------ l=0 a=0 c*
------------------------------------------------------------UAGAAUUCGGGGUAGAAU l=18 a=834 ma
------------------------------------------------------------------------------ l=0 a=0 ma*

UACCCCGAAUUCUAUGGC------------------------------------------------------------ l=18 a=1 
----CCGAAUUCUAUGGCG----------------------------------------------------------- l=15 a=1 
----CCGAAUUCUAUGGCGGCAA------------------------------------------------------- l=19 a=1 
-----------------------------------------------------------AUAGAAUUCGGGGUAGAAU l=19 a=2 
------------------------------------------------------------UAGAAUUCGGGG------ l=12 a=1 
------------------------------------------------------------UAGAAUUCGGGGU----- l=13 a=5 
------------------------------------------------------------UAGAAUUCGGGGUA---- l=14 a=31 
------------------------------------------------------------UAGAAUUCGGGGUAG--- l=15 a=2 
------------------------------------------------------------UAGAAUUCGGGGUAGA-- l=16 a=9 
------------------------------------------------------------UAGAAUUCGGGGUAGAA- l=17 a=31 
------------------------------------------------------------UAGAAUUCGGGGUAGAAU l=18 a=834 (c,ma)
------------------------------------------------------------UAGAAUcCGGGGUAGAAU l=18 a=1 
------------------------------------------------------------UAGgAUUCGGGGUAGAAU l=18 a=1 
------------------------------------------------------------UAGAAUUCGGGGUAGAAc l=18 a=1 
------------------------------------------------------------UAGAAUUCGGGGUAGAAa l=18 a=2 
-------------------------------------------------------------AGAAUUCGGGGUAGAAU l=17 a=3 
--------------------------------------------------------------GAAUUCGGGGUAGAA- l=15 a=1 

mb-00110
ax-0011100
ku-11
ss-101011111010
fn-111
